Catalogue of Romanian Bioinformatic Services - CaRoBioS

Under development - provisional page

This upcoming section will feature a comprehensive list of services developed by Romanian research groups in the life sciences. These services will encompass:

Data resources designed for reuse by Romanian and international research groups.

Bioinformatics software and pipelines.

Training resources, including training portals and event series.

A review process will be organized to assess the resources for inclusion on the CRB website. The evaluation criteria will include the potential to increase the number of users, interoperability, and sustainability.

Please contact CRB at contact_crb@bioinfocluster.ro for futher information.

Services List

Choice of subject

Type of Service

Name of service	Description	Related links *	Type of services	Peer review score
AlphaFold-based protein analysis pipeline	Protein analysis pipeline building on the predictions of AlphaFold2. The core functionality of the pipeline is to determine and present different properties based on the protein sequence and the predicted three-dimensional structure. https://ieeexplore.ieee.org/document/10130994	Tess	Tools	F A I R
Just DNA-Seq	The Just DNA-Seq platform includes multiple modules and bioinformatics pipelines to analyze and annotate human genome data. Just DNA-Seq tools provide reports to retrieve polygenic risk scores (PRS), information about variants associated with age-related diseases or major life threatening risks and longevity-associated variants present in your genome.		Tools
Longevity genie	Longevity genie is an open-source toolbox and chatbot designed to use large language models in answering questions about personal health, genetics, and groundbreaking longevity research.		Tools
NLRscape - an Atlas of plant NOD like receptors	NLRscape is an interactive atlas of plant NLRs equipped with a collection of easy, ready to use bioinformatic tools aimed for the exploration of the complex sequence landscape of this class of receptors in plants.		Tools
Robosample - Molecular Simulation Program based on high-speed robot mechanics	Reliable and user-friendly simulation package for fast biomolecular sampling that does not require extensive expertise in mechanical engineering or in the statistical mechanics of reduced coordinates.		Tools
LRRpred - a ML program for accurate detection of LRR motifs in Leucine Rich Repeat proteins and domains	An open-source tool for detecting LRR motifs within leucine rich repeats proteins. It resides on secondary structure, relative solvent accessibility and disorder predictions that are performed using RaptorX-Property and sequence variability profiles generated using HH-suite on Uniprot20 sequence database.		Tools
NLRexpress - a ML program for swift detection of Nod Like Receptors: NLR/CNL/TNL	NLRexpress is a collection of plant NLR related motif ML predictors. It includes the following modules: CCexpress, TIRexpress, NBSexpress, LRRexpress. Not limited to plant NLRs, the LRR module was developed to be also used for screening other LRR-containing protein classes regardless of their taxonomy.		Tools

* Related links take you to the related pages in three ELIXIR registries:

bio.tools : a registry of software metadata and descriptions.
FAIRsharing : a registry of databases, standards and policies.
Tess : a registry of events, training courses and training materials.