Catalogue of Romanian Bioinformatic Services - CaRoBioS

Under development - provisional page

This upcoming section will feature a comprehensive list of services developed by Romanian research groups in the life sciences. These services will encompass:

Data resources designed for reuse by Romanian and international research groups.

Bioinformatics software and pipelines.

Training resources, including training portals and event series.

A review process will be organized to assess the resources for inclusion on the CRB website. The evaluation criteria will include the potential to increase the number of users, interoperability, and sustainability.

Please contact CRB at contact_crb@bioinfocluster.ro for futher information.

Services List

Choice of subject

Type of Service

Name of service	Description	Related links *	Type of services	Peer review score
Galaxy Server UVT	A local Galaxy instance hosted by the West University of Timişoara.	Tess	Software	F A I R
AlphaFold-based protein analysis pipeline	Protein analysis pipeline building on the predictions of AlphaFold2. The core functionality of the pipeline is to determine and present different properties based on the protein sequence and the predicted three-dimensional structure. https://ieeexplore.ieee.org/document/10130994	Tess	Tools	F A I R
World of Crayfish	Visualization tools for crayfish species and records of the crayfish plague pathogen (Aphanomyces astaci).		Data
Public engagement leaflets	Leaflets adressed to the general public and medical practitioners on general genomomics topics and the secondary use of human genomics data Public Engagement leaflets	bio.tools FAIRsharing Tess	Documents	F A I R
Just DNA-Seq	The Just DNA-Seq platform includes multiple modules and bioinformatics pipelines to analyze and annotate human genome data. Just DNA-Seq tools provide reports to retrieve polygenic risk scores (PRS), information about variants associated with age-related diseases or major life threatening risks and longevity-associated variants present in your genome.		Tools
SynergyAge	The SynergyAge database hosts high-quality, manually curated information about the synergistic and antagonistic lifespan effects of genetic interventions in model organisms, also allowing users to explore the longevity relationships between genes in a visual way.		Database
MetaboAge	MetaboAge is a free, open-source, manually curated human aging-related metabolome database. It provides intuitive bioinformatics tools for the visualization, interpretation, and analysis of pathway knowledge with regards to metabolites that change during the aging process.		Database
MitoAge	MitoAge is a curated, publicly available database, containing an extensive collection of mtDNA features and longevity records. It contains calculated mtDNA compositional features of the entire mitochondrial genome, mtDNA coding (tRNA, rRNA, protein-coding genes), and non-coding (D-loop, insertions) regions, codon usage for each protein-coding gene, and longevity records for over 900 species, as well as tools for the comparative analysis of mtDNA, particularly focusing on animal longevity.		Database
Longevity genie	Longevity genie is an open-source toolbox and chatbot designed to use large language models in answering questions about personal health, genetics, and groundbreaking longevity research.		Tools
SAGS DB - Structural Assessment of Glycosylation Site Database	The database for the Structural Assessment of Glycosylation Sites.		Data resource	F A I R

* Related links take you to the related pages in three ELIXIR registries:

bio.tools : a registry of software metadata and descriptions.
FAIRsharing : a registry of databases, standards and policies.
Tess : a registry of events, training courses and training materials.